# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/46371
#=GF DE Genome polyprotein
#=GF AC 2.40.10.10/FF/46371
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 36.747
#=GS P14336/1481-1504_1579-1660  AC P14336
#=GS P14336/1481-1504_1579-1660  OS Tick-borne encephalitis virus (WESTERN SUBTYPE)
#=GS P14336/1481-1504_1579-1660  DE Genome polyprotein
#=GS P14336/1481-1504_1579-1660  DR GENE3D; 8370febd0d60080b615938960ebe3d60/1481-1504_1579-1660; 
#=GS P14336/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GS P14336/1481-1504_1579-1660  DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS Q01299/1482-1504_1579-1660  AC Q01299
#=GS Q01299/1482-1504_1579-1660  OS Tick-borne encephalitis virus (strain HYPR)
#=GS Q01299/1482-1504_1579-1660  DE Genome polyprotein
#=GS Q01299/1482-1504_1579-1660  DR GENE3D; b8fc46b0657a38123419a0cf70661292/1482-1504_1579-1660; 
#=GS Q01299/1482-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GS Q01299/1482-1504_1579-1660  DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P29837/1481-1504_1579-1660  AC P29837
#=GS P29837/1481-1504_1579-1660  OS Langat virus (strain TP21)
#=GS P29837/1481-1504_1579-1660  DE Genome polyprotein
#=GS P29837/1481-1504_1579-1660  DR GENE3D; c3fcad35ad9f1e02999e1fc63aa88206/1481-1504_1579-1660; 
#=GS P29837/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Langat virus; 
#=GS P29837/1481-1504_1579-1660  DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P07720/1482-1504_1579-1660  AC P07720
#=GS P07720/1482-1504_1579-1660  OS Tick-borne encephalitis virus (STRAIN SOFJIN)
#=GS P07720/1482-1504_1579-1660  DE Genome polyprotein
#=GS P07720/1482-1504_1579-1660  DR GENE3D; c63772494d5357262d7c81f3d05c13b0/1482-1504_1579-1660; 
#=GS P07720/1482-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GS P07720/1482-1504_1579-1660  DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P22338/1481-1504_1579-1660  AC P22338
#=GS P22338/1481-1504_1579-1660  OS Louping ill virus
#=GS P22338/1481-1504_1579-1660  DE Genome polyprotein
#=GS P22338/1481-1504_1579-1660  DR GENE3D; cec19c09e1313d51eb34e0d5080b7b38/1481-1504_1579-1660; 
#=GS P22338/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Louping ill virus; 
#=GS P22338/1481-1504_1579-1660  DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS G4XII4/1481-1504_1579-1660  AC G4XII4
#=GS G4XII4/1481-1504_1579-1660  OS Tick-borne encephalitis virus
#=GS G4XII4/1481-1504_1579-1660  DE Genome polyprotein
#=GS G4XII4/1481-1504_1579-1660  DR GENE3D; 28735b21d71744c967cb9dd82223000f/1481-1504_1579-1660; 
#=GS G4XII4/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GS G4XII4/1481-1504_1579-1660  DR GO; GO:0019079; 
#=GS Q88489/1481-1504_1579-1660  AC Q88489
#=GS Q88489/1481-1504_1579-1660  OS Tick-borne encephalitis virus
#=GS Q88489/1481-1504_1579-1660  DE Genome polyprotein
#=GS Q88489/1481-1504_1579-1660  DR GENE3D; 24d92d1fd439a856607a6ce29291aacf/1481-1504_1579-1660; 
#=GS Q88489/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GS I1VEB1/1481-1504_1579-1660  AC I1VEB1
#=GS I1VEB1/1481-1504_1579-1660  OS Tick-borne encephalitis virus
#=GS I1VEB1/1481-1504_1579-1660  DE Genome polyprotein
#=GS I1VEB1/1481-1504_1579-1660  DR GENE3D; d9e35748a115034fdb7b802f1eb2898f/1481-1504_1579-1660; 
#=GS I1VEB1/1481-1504_1579-1660  DR ORG; Viruses; Flaviviridae; Flavivirus; tick-borne encephalitis virus group; Tick-borne encephalitis virus; 
#=GF TC 212.6 2.9E-67
#=GF SQ 8
P14336/1481-1504_1579-1660          TEMLRSSRRSDLVFSGQGGRERGDEKWKGETVQVHAFPPGRAHEVHQCQPGELILDTGRKLGAIPIDLVKGTSGSPILNAQGVVVGLYGNGLKTNETYVSSIAQGE
Q01299/1482-1504_1579-1660          -KMLRSSRRSDLVFSGQGGRERGDEKWKGETVQVHAFPPGKAHEVHQCQPGELILDTGRKLGAIPIDLVKGTSGSPILNAQGVVVGLYGNGLKTNETYVSSIAQGE
P29837/1481-1504_1579-1660          SEMLGSPRRTDLVFSGCSEGRSDSSRWRGETVQVHAFPPGRAHETHQCQPGELILENGRKMGAIPIDLAKGTSGSPIMNSQGEVVGLYGNGLKTNDTYVSSIAQGE
P07720/1482-1504_1579-1660          -EMLRTARRSGLVFSGQGGRERGDEKWKGETVQVHAFPPGRAHEVHQCQPGELLLDTGRRIGAVPIDLAKGTSGSPILNSQGVVVGLYGNGLKTNETYVSSIAQGE
P22338/1481-1504_1579-1660          TEIMRSSRRSDLVYSGQGGQERGDEKWKGETVQVHAFPPGRAHEVHQCQPGELILDTGKRLGAIPIDLAKGTSGSPILNAQGVVVGLYGNGPKTNESYVSSIAQGE
G4XII4/1481-1504_1579-1660          SEMLRTARRSDLVFSGQGGRERGDEKWKGETVQVHAFPPGRAHEVHQCQPGELLLDTGRRIGAVPIDLAKGTSGSPILNSQGVVVGLYGNGLKTNETYVSSIAQGE
Q88489/1481-1504_1579-1660          TEMLRSSRRSDLVFSGQGGRERGDEKWKGETVQVHAFPPGKAHEVHQCQPGELILDTGRKLGAIPIDLVKGTSGSPILNAQGVVVGLYGNGLKTNETYVSSIAQGE
I1VEB1/1481-1504_1579-1660          SEMMRSARRSDLVFSGQGGRERGDEKWKGETVQVHAFPPGKAHEVHQCQPGELLLDTGRRVGAIPIDLAKGTSGSPIXNAQGAVVGLYGNGLKTNETYVSSIAQGE
#=GC scorecons                      3777664996799899566566666797999999999999799969999999969769865997999969999999959599499999999799977999999999
#=GC scorecons_70                   _*****_*********_**_*_**_***********************************_****************_*_**_***********************
#=GC scorecons_80                   _**____**_******_________*******************_********_**_**__*******_********_*_**_***********************
#=GC scorecons_90                   _______**__*****__________*_************_***_********_*__*___**_****_********_*_**_********_***__*********
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