# STOCKHOLM 1.0 #=GF ID 2.40.10.10/FF/46301 #=GF DE Replicase polyprotein 1ab #=GF AC 2.40.10.10/FF/46301 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 52.824 #=GS 3tloA02/99-197 AC P0C6U6 #=GS 3tloA02/99-197 OS Human coronavirus NL63 #=GS 3tloA02/99-197 DE Replicase polyprotein 1a #=GS 3tloA02/99-197 DR CATH; 3tlo; A:99-197; #=GS 3tloA02/99-197 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus NL63; #=GS 3tloA02/99-197 DR EC; 3.4.19.12; #=GS P0C6X5/3038-3136 AC P0C6X5 #=GS P0C6X5/3038-3136 OS Human coronavirus NL63 #=GS P0C6X5/3038-3136 DE Replicase polyprotein 1ab #=GS P0C6X5/3038-3136 DR GENE3D; 570fe359ed94032c0dc36366596183f9/3038-3136; #=GS P0C6X5/3038-3136 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus NL63; #=GS P0C6X5/3038-3136 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS 4xfqA02/99-196 AC K4L9I6 #=GS 4xfqA02/99-196 OS Porcine epidemic diarrhea virus #=GS 4xfqA02/99-196 DE Polyprotein 1ab #=GS 4xfqA02/99-196 DR CATH; 4xfq; A:99-196; #=GS 4xfqA02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS 4zuhA02/99-196 AC R4JK63 #=GS 4zuhA02/99-196 OS Porcine epidemic diarrhea virus #=GS 4zuhA02/99-196 DE Polyprotein #=GS 4zuhA02/99-196 DR CATH; 4zuh; A:99-196; #=GS 4zuhA02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS 5hyoA02/99-196 AC U6BPB2 #=GS 5hyoA02/99-196 OS Porcine epidemic diarrhea virus #=GS 5hyoA02/99-196 DE Polyprotein 1a #=GS 5hyoA02/99-196 DR CATH; 5hyo; A:99-196; #=GS 5hyoA02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS 3tloB02/99-197 AC P0C6U6 #=GS 3tloB02/99-197 OS Human coronavirus NL63 #=GS 3tloB02/99-197 DE Replicase polyprotein 1a #=GS 3tloB02/99-197 DR CATH; 3tlo; B:99-197; #=GS 3tloB02/99-197 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus NL63; #=GS 3tloB02/99-197 DR EC; 3.4.19.12; #=GS P0C6Y4/2998-3011_3096-3188 AC P0C6Y4 #=GS P0C6Y4/2998-3011_3096-3188 OS Porcine epidemic diarrhea virus CV777 #=GS P0C6Y4/2998-3011_3096-3188 DE Replicase polyprotein 1ab #=GS P0C6Y4/2998-3011_3096-3188 DR GENE3D; fc7cea9ed26ec9f7bf280d7f9f4b95e1/2998-3011_3096-3188; #=GS P0C6Y4/2998-3011_3096-3188 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS P0C6Y4/2998-3011_3096-3188 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS P0C6X1/2967-2979_3066-3157 AC P0C6X1 #=GS P0C6X1/2967-2979_3066-3157 OS Human coronavirus 229E #=GS P0C6X1/2967-2979_3066-3157 DE Replicase polyprotein 1ab #=GS P0C6X1/2967-2979_3066-3157 DR GENE3D; 62efc71e5958c1930fbb3a2122d83e3e/2967-2979_3066-3157; #=GS P0C6X1/2967-2979_3066-3157 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; #=GS P0C6X1/2967-2979_3066-3157 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS P0C6W0/3014-3026_3111-3203 AC P0C6W0 #=GS P0C6W0/3014-3026_3111-3203 OS Scotophilus bat coronavirus 512 #=GS P0C6W0/3014-3026_3111-3203 DE Replicase polyprotein 1ab #=GS P0C6W0/3014-3026_3111-3203 DR GENE3D; 424e12af29a43e6d55c91c900364cdc1/3014-3026_3111-3203; #=GS P0C6W0/3014-3026_3111-3203 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Scotophilus bat coronavirus 512; #=GS P0C6W0/3014-3026_3111-3203 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS P0C6U6/3038-3136 AC P0C6U6 #=GS P0C6U6/3038-3136 OS Human coronavirus NL63 #=GS P0C6U6/3038-3136 DE Replicase polyprotein 1a #=GS P0C6U6/3038-3136 DR GENE3D; 580302c5a68fdf15cac4c672386b5b49/3038-3136; #=GS P0C6U6/3038-3136 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus NL63; #=GS P0C6U6/3038-3136 DR EC; 3.4.19.12; #=GS P0C6V6/2998-3011_3096-3188 AC P0C6V6 #=GS P0C6V6/2998-3011_3096-3188 OS Porcine epidemic diarrhea virus CV777 #=GS P0C6V6/2998-3011_3096-3188 DE Replicase polyprotein 1a #=GS P0C6V6/2998-3011_3096-3188 DR GENE3D; c1654e985dc75502651e9a0bd6d30c66/2998-3011_3096-3188; #=GS P0C6V6/2998-3011_3096-3188 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS P0C6V6/2998-3011_3096-3188 DR EC; 3.4.19.12; #=GS P0C6U2/2967-2979_3066-3157 AC P0C6U2 #=GS P0C6U2/2967-2979_3066-3157 OS Human coronavirus 229E #=GS P0C6U2/2967-2979_3066-3157 DE Replicase polyprotein 1a #=GS P0C6U2/2967-2979_3066-3157 DR GENE3D; f62d9a0850962d0d4a3c6bcb13a88ad4/2967-2979_3066-3157; #=GS P0C6U2/2967-2979_3066-3157 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Human coronavirus 229E; #=GS P0C6U2/2967-2979_3066-3157 DR EC; 3.4.19.12; #=GS P0C6F6/3014-3026_3111-3203 AC P0C6F6 #=GS P0C6F6/3014-3026_3111-3203 OS Scotophilus bat coronavirus 512 #=GS P0C6F6/3014-3026_3111-3203 DE Replicase polyprotein 1a #=GS P0C6F6/3014-3026_3111-3203 DR GENE3D; c0e750014fd0232f5c3d4d4f2f19cb42/3014-3026_3111-3203; #=GS P0C6F6/3014-3026_3111-3203 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Scotophilus bat coronavirus 512; #=GS P0C6F6/3014-3026_3111-3203 DR EC; 3.4.19.12; #=GS 4xfqB02/99-196 AC K4L9I6 #=GS 4xfqB02/99-196 OS Porcine epidemic diarrhea virus #=GS 4xfqB02/99-196 DE Polyprotein 1ab #=GS 4xfqB02/99-196 DR CATH; 4xfq; B:99-196; #=GS 4xfqB02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS 4zuhB02/99-196 AC R4JK63 #=GS 4zuhB02/99-196 OS Porcine epidemic diarrhea virus #=GS 4zuhB02/99-196 DE Polyprotein #=GS 4zuhB02/99-196 DR CATH; 4zuh; B:99-196; #=GS 4zuhB02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS 5hyoB02/99-196 AC U6BPB2 #=GS 5hyoB02/99-196 OS Porcine epidemic diarrhea virus #=GS 5hyoB02/99-196 DE Polyprotein 1a #=GS 5hyoB02/99-196 DR CATH; 5hyo; B:99-196; #=GS 5hyoB02/99-196 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS A0A1L2KGD2/3092-3190 AC A0A1L2KGD2 #=GS A0A1L2KGD2/3092-3190 OS NL63-related bat coronavirus #=GS A0A1L2KGD2/3092-3190 DE ORF1ab protein #=GS A0A1L2KGD2/3092-3190 DR GENE3D; 229b3f8901fc56c4344a7f9356c3b9a1/3092-3190; #=GS A0A1L2KGD2/3092-3190 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; NL63-related bat coronavirus; #=GS A0A067YRM0/2990-3003_3088-3180 AC A0A067YRM0 #=GS A0A067YRM0/2990-3003_3088-3180 OS Porcine epidemic diarrhea virus #=GS A0A067YRM0/2990-3003_3088-3180 DE Polyprotein #=GS A0A067YRM0/2990-3003_3088-3180 DR GENE3D; 3790cbb4d2c2f619b91d80a4bc3cc823/2990-3003_3088-3180; #=GS A0A067YRM0/2990-3003_3088-3180 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS U6BPB2/2998-3011_3096-3188 AC U6BPB2 #=GS U6BPB2/2998-3011_3096-3188 OS Porcine epidemic diarrhea virus #=GS U6BPB2/2998-3011_3096-3188 DE Polyprotein 1a #=GS U6BPB2/2998-3011_3096-3188 DR GENE3D; 82067c7f46d63a983eabbd66fc2b41c3/2998-3011_3096-3188; #=GS U6BPB2/2998-3011_3096-3188 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS A0A1L2KJJ9/3092-3190 AC A0A1L2KJJ9 #=GS A0A1L2KJJ9/3092-3190 OS NL63-related bat coronavirus #=GS A0A1L2KJJ9/3092-3190 DE ORF1a protein #=GS A0A1L2KJJ9/3092-3190 DR GENE3D; 8ca0ffec8025871810832989c613d8d7/3092-3190; #=GS A0A1L2KJJ9/3092-3190 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; NL63-related bat coronavirus; #=GS R4JK63/2998-3011_3096-3188 AC R4JK63 #=GS R4JK63/2998-3011_3096-3188 OS Porcine epidemic diarrhea virus #=GS R4JK63/2998-3011_3096-3188 DE Polyprotein #=GS R4JK63/2998-3011_3096-3188 DR GENE3D; b01ff46052e3214571b7a3669d6bafb3/2998-3011_3096-3188; #=GS R4JK63/2998-3011_3096-3188 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GS K4L9I6/2998-3011_3096-3188 AC K4L9I6 #=GS K4L9I6/2998-3011_3096-3188 OS Porcine epidemic diarrhea virus #=GS K4L9I6/2998-3011_3096-3188 DE Polyprotein 1ab #=GS K4L9I6/2998-3011_3096-3188 DR GENE3D; ba8410d9814a58864ad325aa5952a926/2998-3011_3096-3188; #=GS K4L9I6/2998-3011_3096-3188 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; #=GF TC 185.4 1.3E-58 #=GF SQ 22 3tloA02/99-197 --------------KHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESAN P0C6X5/3038-3136 --------------KHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESAN 4xfqA02/99-196 --------------KYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS 4zuhA02/99-196 --------------KYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGAAGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS 5hyoA02/99-196 --------------KYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS 3tloB02/99-197 --------------KHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESAN P0C6Y4/2998-3011_3096-3188 AGLRKMAQPSGVVEKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQ----- P0C6X1/2967-2979_3066-3157 -GLRKMAQPSGFV--ESFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNL-KNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQV---- P0C6W0/3014-3026_3111-3203 -GLRKMAQPSGIVENYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNI-NNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQ----- P0C6U6/3038-3136 --------------KHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESAN P0C6V6/2998-3011_3096-3188 AGLRKMAQPSGVVEKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQ----- P0C6U2/2967-2979_3066-3157 -GLRKMAQPSGFV--ESFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNL-KNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQV---- P0C6F6/3014-3026_3111-3203 -GLRKMAQPSGIVENYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNI-NNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQ----- 4xfqB02/99-196 --------------KYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS 4zuhB02/99-196 --------------KYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGAAGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS 5hyoB02/99-196 --------------KYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGAS A0A1L2KGD2/3092-3190 --------------PHSFRTLKPGESFNILACYDGVASGVFGVNLRTNYTIRGSFINGACGSPGYNVKSDGTVEFVYLHQIELGSGCHVGSNFEGAVYGGFEDQPTLQVESAS A0A067YRM0/2990-3003_3088-3180 AGLRKMAQPSGVVEKYTHRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPILQ----- U6BPB2/2998-3011_3096-3188 AGLRKMAQPSGVVEKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQ----- A0A1L2KJJ9/3092-3190 --------------PHSFRTLKPGESFNILACYDGVASGVFGVNLRTNYTIRGSFINGACGSPGYNVKSDGTVEFVYLHQIELGSGCHVGSNFEGAVYGGFEDQPTLQVESAS R4JK63/2998-3011_3096-3188 AGLRKMAQPSGVVEKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQ----- K4L9I6/2998-3011_3096-3188 AGLRKMAQPSGVVEKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNI-NNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQ----- #=GC scorecons 01111111111111565777677977999999979495997999796969979999799899999960669699969798699999599996669569957799959932121 #=GC scorecons_70 _________________******************_*_********_********************_******************_*****__*_***_*****_**_____ #=GC scorecons_80 __________________**__*************_*_******_*_*_*****************____*_***_****_*****_****___*__**_*****_**_____ #=GC scorecons_90 _______________________*__*******_*_*_**_***_*_*_**_****_**_******____*_***_*_**_*****_****___*__**___***_**_____ //