# STOCKHOLM 1.0 #=GF ID 2.40.10.10/FF/46159 #=GF DE Replicase polyprotein 1ab #=GF AC 2.40.10.10/FF/46159 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 24.503 #=GS 3d23A01/1-16_102-199 AC P0C6U3 #=GS 3d23A01/1-16_102-199 OS Human coronavirus HKU1 (isolate N1) #=GS 3d23A01/1-16_102-199 DE Replicase polyprotein 1a #=GS 3d23A01/1-16_102-199 DR CATH; 3d23; A:-1-14; A:100-197; #=GS 3d23A01/1-16_102-199 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS 3d23A01/1-16_102-199 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6X9/3334-3347_3433-3525 AC P0C6X9 #=GS P0C6X9/3334-3347_3433-3525 OS Murine hepatitis virus strain A59 #=GS P0C6X9/3334-3347_3433-3525 DE Replicase polyprotein 1ab #=GS P0C6X9/3334-3347_3433-3525 DR GENE3D; a295455055bc07d4c84ee02ca5e8e77b/3334-3347_3433-3525; #=GS P0C6X9/3334-3347_3433-3525 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6X9/3334-3347_3433-3525 DR GO; GO:0039714; #=GS P0C6X9/3334-3347_3433-3525 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS 3d23B01/1-16_102-199 AC P0C6U3 #=GS 3d23B01/1-16_102-199 OS Human coronavirus HKU1 (isolate N1) #=GS 3d23B01/1-16_102-199 DE Replicase polyprotein 1a #=GS 3d23B01/1-16_102-199 DR CATH; 3d23; B:0-14; B:100-197; #=GS 3d23B01/1-16_102-199 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS 3d23B01/1-16_102-199 DR EC; 3.4.19.12; 3.4.22.69; #=GS 3d23C01/1-16_102-199 AC P0C6U3 #=GS 3d23C01/1-16_102-199 OS Human coronavirus HKU1 (isolate N1) #=GS 3d23C01/1-16_102-199 DE Replicase polyprotein 1a #=GS 3d23C01/1-16_102-199 DR CATH; 3d23; C:2-14; C:100-197; #=GS 3d23C01/1-16_102-199 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS 3d23C01/1-16_102-199 DR EC; 3.4.19.12; 3.4.22.69; #=GS 3d23D01/1-16_102-199 AC P0C6U3 #=GS 3d23D01/1-16_102-199 OS Human coronavirus HKU1 (isolate N1) #=GS 3d23D01/1-16_102-199 DE Replicase polyprotein 1a #=GS 3d23D01/1-16_102-199 DR CATH; 3d23; D:1-14; D:100-197; #=GS 3d23D01/1-16_102-199 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS 3d23D01/1-16_102-199 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6X4/3285-3298_3384-3476 AC P0C6X4 #=GS P0C6X4/3285-3298_3384-3476 OS Human coronavirus HKU1 (isolate N5) #=GS P0C6X4/3285-3298_3384-3476 DE Replicase polyprotein 1ab #=GS P0C6X4/3285-3298_3384-3476 DR GENE3D; 19f4f896994a5ca20285f5989ea4bfd0/3285-3298_3384-3476; #=GS P0C6X4/3285-3298_3384-3476 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6X4/3285-3298_3384-3476 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X2/3335-3348_3434-3526 AC P0C6X2 #=GS P0C6X2/3335-3348_3434-3526 OS Human coronavirus HKU1 (isolate N1) #=GS P0C6X2/3335-3348_3434-3526 DE Replicase polyprotein 1ab #=GS P0C6X2/3335-3348_3434-3526 DR GENE3D; 4aac8b3ceb118eb349a76cabc26c95cf/3335-3348_3434-3526; #=GS P0C6X2/3335-3348_3434-3526 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6X2/3335-3348_3434-3526 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X0/3247-3260_3346-3438 AC P0C6X0 #=GS P0C6X0/3247-3260_3346-3438 OS Bovine coronavirus strain Quebec #=GS P0C6X0/3247-3260_3346-3438 DE Replicase polyprotein 1ab #=GS P0C6X0/3247-3260_3346-3438 DR GENE3D; 6fea9d6192c40e4681c538fdf8a90d4f/3247-3260_3346-3438; #=GS P0C6X0/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6X0/3247-3260_3346-3438 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X3/3305-3318_3404-3496 AC P0C6X3 #=GS P0C6X3/3305-3318_3404-3496 OS Human coronavirus HKU1 (isolate N2) #=GS P0C6X3/3305-3318_3404-3496 DE Replicase polyprotein 1ab #=GS P0C6X3/3305-3318_3404-3496 DR GENE3D; 8347884a26a0d073ad757d6a2c218355/3305-3318_3404-3496; #=GS P0C6X3/3305-3318_3404-3496 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6X3/3305-3318_3404-3496 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6W8/3247-3260_3346-3438 AC P0C6W8 #=GS P0C6W8/3247-3260_3346-3438 OS Bovine respiratory coronavirus (strain 98TXSF-110-LUN) #=GS P0C6W8/3247-3260_3346-3438 DE Replicase polyprotein 1ab #=GS P0C6W8/3247-3260_3346-3438 DR GENE3D; 8e388c0010ebf15142afabdc25b7c61e/3247-3260_3346-3438; #=GS P0C6W8/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6W8/3247-3260_3346-3438 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X6/3247-3260_3346-3438 AC P0C6X6 #=GS P0C6X6/3247-3260_3346-3438 OS Human coronavirus OC43 #=GS P0C6X6/3247-3260_3346-3438 DE Replicase polyprotein 1ab #=GS P0C6X6/3247-3260_3346-3438 DR GENE3D; 928b4d6bf990e371daf334cc4abcf8cb/3247-3260_3346-3438; #=GS P0C6X6/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6X6/3247-3260_3346-3438 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6W7/3247-3260_3346-3438 AC P0C6W7 #=GS P0C6W7/3247-3260_3346-3438 OS Bovine enteric coronavirus (strain 98TXSF-110-ENT) #=GS P0C6W7/3247-3260_3346-3438 DE Replicase polyprotein 1ab #=GS P0C6W7/3247-3260_3346-3438 DR GENE3D; 9970ad7ce26a4a7c208c1aa02dcb9d43/3247-3260_3346-3438; #=GS P0C6W7/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6W7/3247-3260_3346-3438 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6W9/3247-3260_3346-3438 AC P0C6W9 #=GS P0C6W9/3247-3260_3346-3438 OS Bovine coronavirus Mebus #=GS P0C6W9/3247-3260_3346-3438 DE Replicase polyprotein 1ab #=GS P0C6W9/3247-3260_3346-3438 DR GENE3D; fb694aad1ae1cda1b102d025afabc59e/3247-3260_3346-3438; #=GS P0C6W9/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6W9/3247-3260_3346-3438 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6Y0/3337-3350_3436-3528 AC P0C6Y0 #=GS P0C6Y0/3337-3350_3436-3528 OS Murine hepatitis virus strain JHM #=GS P0C6Y0/3337-3350_3436-3528 DE Replicase polyprotein 1ab #=GS P0C6Y0/3337-3350_3436-3528 DR GENE3D; 058565666d4e2f7d8bb8c1b0aa5daebf/3337-3350_3436-3528; #=GS P0C6Y0/3337-3350_3436-3528 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6Y0/3337-3350_3436-3528 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X8/3280-3293_3379-3471 AC P0C6X8 #=GS P0C6X8/3280-3293_3379-3471 OS Murine hepatitis virus strain 2 #=GS P0C6X8/3280-3293_3379-3471 DE Replicase polyprotein 1ab #=GS P0C6X8/3280-3293_3379-3471 DR GENE3D; 209c4e8275027a4b84d4652963939e34/3280-3293_3379-3471; #=GS P0C6X8/3280-3293_3379-3471 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6X8/3280-3293_3379-3471 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6V1/3337-3350_3436-3528 AC P0C6V1 #=GS P0C6V1/3337-3350_3436-3528 OS Murine hepatitis virus strain JHM #=GS P0C6V1/3337-3350_3436-3528 DE Replicase polyprotein 1a #=GS P0C6V1/3337-3350_3436-3528 DR GENE3D; 3efbab58936f80467997d52558b54edf/3337-3350_3436-3528; #=GS P0C6V1/3337-3350_3436-3528 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6V1/3337-3350_3436-3528 DR GO; GO:0004197; GO:0097264; #=GS P0C6V1/3337-3350_3436-3528 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6V0/3334-3347_3433-3525 AC P0C6V0 #=GS P0C6V0/3334-3347_3433-3525 OS Murine hepatitis virus strain A59 #=GS P0C6V0/3334-3347_3433-3525 DE Replicase polyprotein 1a #=GS P0C6V0/3334-3347_3433-3525 DR GENE3D; 6dad0d79fe3be65184b65b1537218e0d/3334-3347_3433-3525; #=GS P0C6V0/3334-3347_3433-3525 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6V0/3334-3347_3433-3525 DR GO; GO:0039714; GO:0097264; #=GS P0C6V0/3334-3347_3433-3525 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U3/3335-3348_3434-3526 AC P0C6U3 #=GS P0C6U3/3335-3348_3434-3526 OS Human coronavirus HKU1 (isolate N1) #=GS P0C6U3/3335-3348_3434-3526 DE Replicase polyprotein 1a #=GS P0C6U3/3335-3348_3434-3526 DR GENE3D; 162a9b43ef77ff98692e201e839a7870/3335-3348_3434-3526; #=GS P0C6U3/3335-3348_3434-3526 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6U3/3335-3348_3434-3526 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U7/3247-3260_3346-3438 AC P0C6U7 #=GS P0C6U7/3247-3260_3346-3438 OS Human coronavirus OC43 #=GS P0C6U7/3247-3260_3346-3438 DE Replicase polyprotein 1a #=GS P0C6U7/3247-3260_3346-3438 DR GENE3D; 17068c3bd25757aa891fab53c3152b80/3247-3260_3346-3438; #=GS P0C6U7/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6U7/3247-3260_3346-3438 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6T8/3247-3260_3346-3438 AC P0C6T8 #=GS P0C6T8/3247-3260_3346-3438 OS Bovine enteric coronavirus (strain 98TXSF-110-ENT) #=GS P0C6T8/3247-3260_3346-3438 DE Replicase polyprotein 1a #=GS P0C6T8/3247-3260_3346-3438 DR GENE3D; 396c1b1eadb54d137f2f2b511756277a/3247-3260_3346-3438; #=GS P0C6T8/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6T8/3247-3260_3346-3438 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U4/3305-3318_3404-3496 AC P0C6U4 #=GS P0C6U4/3305-3318_3404-3496 OS Human coronavirus HKU1 (isolate N2) #=GS P0C6U4/3305-3318_3404-3496 DE Replicase polyprotein 1a #=GS P0C6U4/3305-3318_3404-3496 DR GENE3D; a95e2b74756ad1f0d32d6ed4ff624f86/3305-3318_3404-3496; #=GS P0C6U4/3305-3318_3404-3496 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6U4/3305-3318_3404-3496 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6T9/3247-3260_3346-3438 AC P0C6T9 #=GS P0C6T9/3247-3260_3346-3438 OS Bovine respiratory coronavirus (strain 98TXSF-110-LUN) #=GS P0C6T9/3247-3260_3346-3438 DE Replicase polyprotein 1a #=GS P0C6T9/3247-3260_3346-3438 DR GENE3D; cb5d652d81ee737b8ab5c3f0a3a94236/3247-3260_3346-3438; #=GS P0C6T9/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6T9/3247-3260_3346-3438 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U5/3285-3298_3384-3476 AC P0C6U5 #=GS P0C6U5/3285-3298_3384-3476 OS Human coronavirus HKU1 (isolate N5) #=GS P0C6U5/3285-3298_3384-3476 DE Replicase polyprotein 1a #=GS P0C6U5/3285-3298_3384-3476 DR GENE3D; e52e3f23a25c2ab4b83082c6d5ff4c77/3285-3298_3384-3476; #=GS P0C6U5/3285-3298_3384-3476 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS P0C6U5/3285-3298_3384-3476 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U1/3247-3260_3346-3438 AC P0C6U1 #=GS P0C6U1/3247-3260_3346-3438 OS Bovine coronavirus strain Quebec #=GS P0C6U1/3247-3260_3346-3438 DE Replicase polyprotein 1a #=GS P0C6U1/3247-3260_3346-3438 DR GENE3D; fe6d7c792623b707e5d5fb20a2d51b15/3247-3260_3346-3438; #=GS P0C6U1/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6U1/3247-3260_3346-3438 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U9/3280-3293_3379-3471 AC P0C6U9 #=GS P0C6U9/3280-3293_3379-3471 OS Murine hepatitis virus strain 2 #=GS P0C6U9/3280-3293_3379-3471 DE Replicase polyprotein 1a #=GS P0C6U9/3280-3293_3379-3471 DR GENE3D; 13d18a73ba526f04ef9c113a6763582e/3280-3293_3379-3471; #=GS P0C6U9/3280-3293_3379-3471 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS P0C6U9/3280-3293_3379-3471 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6U0/3247-3260_3346-3438 AC P0C6U0 #=GS P0C6U0/3247-3260_3346-3438 OS Bovine coronavirus Mebus #=GS P0C6U0/3247-3260_3346-3438 DE Replicase polyprotein 1a #=GS P0C6U0/3247-3260_3346-3438 DR GENE3D; 9fd9b2882127dc87aebc40989b8ab067/3247-3260_3346-3438; #=GS P0C6U0/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS P0C6U0/3247-3260_3346-3438 DR EC; 3.4.19.12; 3.4.22.69; #=GS H9BZX6/3335-3348_3434-3526 AC H9BZX6 #=GS H9BZX6/3335-3348_3434-3526 OS Murine hepatitis virus strain S/3239-17 #=GS H9BZX6/3335-3348_3434-3526 DE 1a #=GS H9BZX6/3335-3348_3434-3526 DR GENE3D; 08b5942a152ae458753de2816549cb17/3335-3348_3434-3526; #=GS H9BZX6/3335-3348_3434-3526 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS A8R4C5/3293-3306_3392-3484 AC A8R4C5 #=GS A8R4C5/3293-3306_3392-3484 OS Equine coronavirus #=GS A8R4C5/3293-3306_3392-3484 DE ORF1a polyprotein #=GS A8R4C5/3293-3306_3392-3484 DR GENE3D; 136faed7efc42097153f7f8f78260e4e/3293-3306_3392-3484; #=GS A8R4C5/3293-3306_3392-3484 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS Q0ZJG7/3214-3227_3313-3405 AC Q0ZJG7 #=GS Q0ZJG7/3214-3227_3313-3405 OS Human coronavirus HKU1 #=GS Q0ZJG7/3214-3227_3313-3405 DE Orf1ab polyprotein #=GS Q0ZJG7/3214-3227_3313-3405 DR GENE3D; 14621d8ee1c10cbe05b25e069750f00f/3214-3227_3313-3405; #=GS Q0ZJG7/3214-3227_3313-3405 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS Q0ZJJ1/3394-3407_3493-3585 AC Q0ZJJ1 #=GS Q0ZJJ1/3394-3407_3493-3585 OS Human coronavirus HKU1 #=GS Q0ZJJ1/3394-3407_3493-3585 DE Orf1ab polyprotein #=GS Q0ZJJ1/3394-3407_3493-3585 DR GENE3D; 3003a1f3ac3071b37e8d7663e175eb59/3394-3407_3493-3585; #=GS Q0ZJJ1/3394-3407_3493-3585 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS H9BZX5/3335-3348_3434-3526 AC H9BZX5 #=GS H9BZX5/3335-3348_3434-3526 OS Murine hepatitis virus strain S/3239-17 #=GS H9BZX5/3335-3348_3434-3526 DE 1ab #=GS H9BZX5/3335-3348_3434-3526 DR GENE3D; 46a79a33c7b1e4ae975598e3f8c9346a/3335-3348_3434-3526; #=GS H9BZX5/3335-3348_3434-3526 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS Q0ZJ87/3324-3337_3423-3515 AC Q0ZJ87 #=GS Q0ZJ87/3324-3337_3423-3515 OS Human coronavirus HKU1 #=GS Q0ZJ87/3324-3337_3423-3515 DE Orf1ab polyprotein #=GS Q0ZJ87/3324-3337_3423-3515 DR GENE3D; 49c967c0ee5f803590305edd02bf9afc/3324-3337_3423-3515; #=GS Q0ZJ87/3324-3337_3423-3515 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS A8R4C0/3293-3306_3392-3484 AC A8R4C0 #=GS A8R4C0/3293-3306_3392-3484 OS Equine coronavirus #=GS A8R4C0/3293-3306_3392-3484 DE ORF1ab polyprotein #=GS A8R4C0/3293-3306_3392-3484 DR GENE3D; 91dc9e46b021b4a5eea34d1d7e20a734/3293-3306_3392-3484; #=GS A8R4C0/3293-3306_3392-3484 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS H9AA60/3268-3281_3367-3459 AC H9AA60 #=GS H9AA60/3268-3281_3367-3459 OS Rabbit coronavirus HKU14 #=GS H9AA60/3268-3281_3367-3459 DE Polyprotein #=GS H9AA60/3268-3281_3367-3459 DR GENE3D; a2abb92d9796d9508cde020328dcf955/3268-3281_3367-3459; #=GS H9AA60/3268-3281_3367-3459 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Rabbit coronavirus HKU14; #=GS U3N895/3370-3383_3469-3561 AC U3N895 #=GS U3N895/3370-3383_3469-3561 OS Human coronavirus HKU1 #=GS U3N895/3370-3383_3469-3561 DE Replicase polyprotein 1a #=GS U3N895/3370-3383_3469-3561 DR GENE3D; acb67282963ab177674905305fa07c58/3370-3383_3469-3561; #=GS U3N895/3370-3383_3469-3561 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS U3N7N3/3370-3383_3469-3561 AC U3N7N3 #=GS U3N7N3/3370-3383_3469-3561 OS Human coronavirus HKU1 #=GS U3N7N3/3370-3383_3469-3561 DE Replicase polyprotein 1ab #=GS U3N7N3/3370-3383_3469-3561 DR GENE3D; adcd5abce30018180d5b87bdfb08d1a2/3370-3383_3469-3561; #=GS U3N7N3/3370-3383_3469-3561 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS Q2QKN6/3247-3260_3346-3438 AC Q2QKN6 #=GS Q2QKN6/3247-3260_3346-3438 OS Porcine hemagglutinating encephalomyelitis virus #=GS Q2QKN6/3247-3260_3346-3438 DE Replicase polyprotein #=GS Q2QKN6/3247-3260_3346-3438 DR GENE3D; c16d30e62b1deaa3cad4cb32ba4ed291/3247-3260_3346-3438; #=GS Q2QKN6/3247-3260_3346-3438 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus 1; #=GS A0A0A7UXR0/3294-3307_3393-3485 AC A0A0A7UXR0 #=GS A0A0A7UXR0/3294-3307_3393-3485 OS Betacoronavirus HKU24 #=GS A0A0A7UXR0/3294-3307_3393-3485 DE Replicase polyprotein #=GS A0A0A7UXR0/3294-3307_3393-3485 DR GENE3D; d93a092a95cfc8907fe25899a461d73e/3294-3307_3393-3485; #=GS A0A0A7UXR0/3294-3307_3393-3485 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Betacoronavirus HKU24; #=GS H9AA28/3307-3320_3406-3498 AC H9AA28 #=GS H9AA28/3307-3320_3406-3498 OS Rabbit coronavirus HKU14 #=GS H9AA28/3307-3320_3406-3498 DE Polyprotein #=GS H9AA28/3307-3320_3406-3498 DR GENE3D; ebb9f85c75850d3d2562032fb135397d/3307-3320_3406-3498; #=GS H9AA28/3307-3320_3406-3498 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Rabbit coronavirus HKU14; #=GS U3N9L7/3320-3333_3419-3511 AC U3N9L7 #=GS U3N9L7/3320-3333_3419-3511 OS Human coronavirus HKU1 #=GS U3N9L7/3320-3333_3419-3511 DE Replicase polyprotein 1a #=GS U3N9L7/3320-3333_3419-3511 DR GENE3D; f2b99238bfa0f0203541c4f44665617d/3320-3333_3419-3511; #=GS U3N9L7/3320-3333_3419-3511 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Human coronavirus HKU1; #=GS Q9J3E9/3331-3344_3430-3522 AC Q9J3E9 #=GS Q9J3E9/3331-3344_3430-3522 OS Murine hepatitis virus #=GS Q9J3E9/3331-3344_3430-3522 DE RNA-directed RNA polymerase #=GS Q9J3E9/3331-3344_3430-3522 DR GENE3D; 313020bc5cd6a4e81ab1a1dd6615ebfb/3331-3344_3430-3522; #=GS Q9J3E9/3331-3344_3430-3522 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Murine coronavirus; #=GS A0A096XNH7/3196-3209_3295-3387 AC A0A096XNH7 #=GS A0A096XNH7/3196-3209_3295-3387 OS Longquan Rl rat coronavirus #=GS A0A096XNH7/3196-3209_3295-3387 DE Orf1ab polyprotein #=GS A0A096XNH7/3196-3209_3295-3387 DR GENE3D; 89f5ee7b4e0c4e0f32d7b7af76513a8d/3196-3209_3295-3387; #=GS A0A096XNH7/3196-3209_3295-3387 DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; Longquan Rl rat coronavirus; #=GF TC 235.7 1.0E-73 #=GF SQ 42 3d23A01/1-16_102-199 ASSGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKD P0C6X9/3334-3347_3433-3525 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- 3d23B01/1-16_102-199 ASSGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKD 3d23C01/1-16_102-199 ASSGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKD 3d23D01/1-16_102-199 ASSGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKD P0C6X4/3285-3298_3384-3476 --SGIVKMVSPTSKIEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPYRDAQVVQ----- P0C6X2/3335-3348_3434-3526 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- P0C6X0/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6X3/3305-3318_3404-3496 --SGIVKMVSPTSKIEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- P0C6W8/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6X6/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6W7/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6W9/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6Y0/3337-3350_3436-3528 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- P0C6X8/3280-3293_3379-3471 --SGIVKMVFPTSKVEKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- P0C6V1/3337-3350_3436-3528 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- P0C6V0/3334-3347_3433-3525 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- P0C6U3/3335-3348_3434-3526 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- P0C6U7/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6T8/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6U4/3305-3318_3404-3496 --SGIVKMVSPTSKIEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- P0C6T9/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6U5/3285-3298_3384-3476 --SGIVKMVSPTSKIEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPYRDAQVVQ----- P0C6U1/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- P0C6U9/3280-3293_3379-3471 --SGIVKMVFPTSKVEKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- P0C6U0/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- H9BZX6/3335-3348_3434-3526 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- A8R4C5/3293-3306_3392-3484 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- Q0ZJG7/3214-3227_3313-3405 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- Q0ZJJ1/3394-3407_3493-3585 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- H9BZX5/3335-3348_3434-3526 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- Q0ZJ87/3324-3337_3423-3515 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- A8R4C0/3293-3306_3392-3484 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- H9AA60/3268-3281_3367-3459 --SGIVKMVSPTSKVEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSFTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- U3N895/3370-3383_3469-3561 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- U3N7N3/3370-3383_3469-3561 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- Q2QKN6/3247-3260_3346-3438 --SGIVKMVNPTSKVEKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- A0A0A7UXR0/3294-3307_3393-3485 --SGIAKIVCPTSKVEKYTFGNVKPGETFTVLAAYNGKPQGAFHVTMRSSFTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGNFYGPYRDAQVVQ----- H9AA28/3307-3320_3406-3498 --SGIVKMVSPTSKVEKYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSFTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQ----- U3N9L7/3320-3333_3419-3511 --SGIVKMVSPTSKIEKYTFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQ----- Q9J3E9/3331-3344_3430-3522 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- A0A096XNH7/3196-3209_3295-3387 --SGIVKMVSPTSKVEKYSFGVVKPGETFTVLAAYNGKAQGAFHVTMRSSHTIKGSFLCGSCGSVGYVLMGDSVKFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQ----- #=GC scorecons 009998989599997999699599999999999999978999999889997999999999999998997699697999999999999999999959699999799999900000 #=GC scorecons_70 __*******_***********_***********************************************_************************_**************_____ #=GC scorecons_80 __*******_********_**_***********************************************_**_*********************_*_************_____ #=GC scorecons_90 __*******_****_***_**_***************_************_*****************__**_*_*******************_*_*****_******_____ //