# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/28134
#=GF DE Replicase polyprotein 1a
#=GF AC 2.40.10.10/FF/28134
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 13.449
#=GS 4xfqA01/1-98          AC K4L9I6
#=GS 4xfqA01/1-98          OS Porcine epidemic diarrhea virus
#=GS 4xfqA01/1-98          DE Polyprotein 1ab
#=GS 4xfqA01/1-98          DR CATH; 4xfq; A:1-98; 
#=GS 4xfqA01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS P0C6Y4/3012-3095      AC P0C6Y4
#=GS P0C6Y4/3012-3095      OS Porcine epidemic diarrhea virus CV777
#=GS P0C6Y4/3012-3095      DE Replicase polyprotein 1ab
#=GS P0C6Y4/3012-3095      DR GENE3D; fc7cea9ed26ec9f7bf280d7f9f4b95e1/3012-3095; 
#=GS P0C6Y4/3012-3095      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS P0C6Y4/3012-3095      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V6/3012-3095      AC P0C6V6
#=GS P0C6V6/3012-3095      OS Porcine epidemic diarrhea virus CV777
#=GS P0C6V6/3012-3095      DE Replicase polyprotein 1a
#=GS P0C6V6/3012-3095      DR GENE3D; c1654e985dc75502651e9a0bd6d30c66/3012-3095; 
#=GS P0C6V6/3012-3095      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS P0C6V6/3012-3095      DR EC; 3.4.19.12; 
#=GS 5hyoA01/1-98          AC U6BPB2
#=GS 5hyoA01/1-98          OS Porcine epidemic diarrhea virus
#=GS 5hyoA01/1-98          DE Polyprotein 1a
#=GS 5hyoA01/1-98          DR CATH; 5hyo; A:1-98; 
#=GS 5hyoA01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS 4xfqB01/1-98          AC K4L9I6
#=GS 4xfqB01/1-98          OS Porcine epidemic diarrhea virus
#=GS 4xfqB01/1-98          DE Polyprotein 1ab
#=GS 4xfqB01/1-98          DR CATH; 4xfq; B:1-98; 
#=GS 4xfqB01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS 4zuhA01/1-98          AC R4JK63
#=GS 4zuhA01/1-98          OS Porcine epidemic diarrhea virus
#=GS 4zuhA01/1-98          DE Polyprotein
#=GS 4zuhA01/1-98          DR CATH; 4zuh; A:1-98; 
#=GS 4zuhA01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS 4zuhB01/1-98          AC R4JK63
#=GS 4zuhB01/1-98          OS Porcine epidemic diarrhea virus
#=GS 4zuhB01/1-98          DE Polyprotein
#=GS 4zuhB01/1-98          DR CATH; 4zuh; B:1-98; 
#=GS 4zuhB01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS 5hyoB01/1-98          AC U6BPB2
#=GS 5hyoB01/1-98          OS Porcine epidemic diarrhea virus
#=GS 5hyoB01/1-98          DE Polyprotein 1a
#=GS 5hyoB01/1-98          DR CATH; 5hyo; B:1-98; 
#=GS 5hyoB01/1-98          DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS K4L9I6/3012-3095      AC K4L9I6
#=GS K4L9I6/3012-3095      OS Porcine epidemic diarrhea virus
#=GS K4L9I6/3012-3095      DE Polyprotein 1ab
#=GS K4L9I6/3012-3095      DR GENE3D; ba8410d9814a58864ad325aa5952a926/3012-3095; 
#=GS K4L9I6/3012-3095      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS R4JK63/3012-3095      AC R4JK63
#=GS R4JK63/3012-3095      OS Porcine epidemic diarrhea virus
#=GS R4JK63/3012-3095      DE Polyprotein
#=GS R4JK63/3012-3095      DR GENE3D; b01ff46052e3214571b7a3669d6bafb3/3012-3095; 
#=GS R4JK63/3012-3095      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS U6BPB2/3012-3095      AC U6BPB2
#=GS U6BPB2/3012-3095      OS Porcine epidemic diarrhea virus
#=GS U6BPB2/3012-3095      DE Polyprotein 1a
#=GS U6BPB2/3012-3095      DR GENE3D; 82067c7f46d63a983eabbd66fc2b41c3/3012-3095; 
#=GS U6BPB2/3012-3095      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GS A0A067YRM0/3004-3087  AC A0A067YRM0
#=GS A0A067YRM0/3004-3087  OS Porcine epidemic diarrhea virus
#=GS A0A067YRM0/3004-3087  DE Polyprotein
#=GS A0A067YRM0/3004-3087  DR GENE3D; 3790cbb4d2c2f619b91d80a4bc3cc823/3004-3087; 
#=GS A0A067YRM0/3004-3087  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Porcine epidemic diarrhea virus; 
#=GF TC 200.0 1.2E-63
#=GF SQ 12
4xfqA01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
P0C6Y4/3012-3095              --------------KCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTP
P0C6V6/3012-3095              --------------KCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTP
5hyoA01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
4xfqB01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
4zuhA01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
4zuhB01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
5hyoB01/1-98                  AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
K4L9I6/3012-3095              --------------KCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
R4JK63/3012-3095              --------------KCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
U6BPB2/3012-3095              --------------KCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP
A0A067YRM0/3004-3087          --------------KCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTP
#=GC scorecons                11111111111111999999999999999999997979999999999999999999999999999999999999999669999999999999999999
#=GC scorecons_70             ______________************************************************************************************
#=GC scorecons_80             ______________***************************************************************__*******************
#=GC scorecons_90             ______________********************_*_****************************************__*******************
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