# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/20007
#=GF DE Replicase polyprotein 1ab
#=GF AC 2.40.10.10/FF/20007
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 8.738
#=GS Q98VG9/2904-2917_3002-3094  AC Q98VG9
#=GS Q98VG9/2904-2917_3002-3094  OS Feline infectious peritonitis virus (strain 79-1146)
#=GS Q98VG9/2904-2917_3002-3094  DE Replicase polyprotein 1ab
#=GS Q98VG9/2904-2917_3002-3094  DR GENE3D; 90e5048a7dffa563142658f88916a85a/2904-2917_3002-3094; 
#=GS Q98VG9/2904-2917_3002-3094  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS Q98VG9/2904-2917_3002-3094  DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V2/2879-2892_2977-3069  AC P0C6V2
#=GS P0C6V2/2879-2892_2977-3069  OS Porcine transmissible gastroenteritis coronavirus strain Purdue
#=GS P0C6V2/2879-2892_2977-3069  DE Replicase polyprotein 1a
#=GS P0C6V2/2879-2892_2977-3069  DR GENE3D; 21cc0a2348ee15c345ba8c37cb9274ab/2879-2892_2977-3069; 
#=GS P0C6V2/2879-2892_2977-3069  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS P0C6V2/2879-2892_2977-3069  DR EC; 3.4.19.12; 
#=GS P0C6Y5/2879-2892_2977-3069  AC P0C6Y5
#=GS P0C6Y5/2879-2892_2977-3069  OS Porcine transmissible gastroenteritis coronavirus strain Purdue
#=GS P0C6Y5/2879-2892_2977-3069  DE Replicase polyprotein 1ab
#=GS P0C6Y5/2879-2892_2977-3069  DR GENE3D; 39406f63e9b1b0cfa745de6e6e9f5783/2879-2892_2977-3069; 
#=GS P0C6Y5/2879-2892_2977-3069  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS P0C6Y5/2879-2892_2977-3069  DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS F1CNY5/2879-2892_2977-3069  AC F1CNY5
#=GS F1CNY5/2879-2892_2977-3069  OS Transmissible gastroenteritis virus
#=GS F1CNY5/2879-2892_2977-3069  DE Replicase
#=GS F1CNY5/2879-2892_2977-3069  DR GENE3D; 21cc0a2348ee15c345ba8c37cb9274ab/2879-2892_2977-3069; 
#=GS F1CNY5/2879-2892_2977-3069  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS F1CNY5/2879-2892_2977-3069  DR EC; 3.4.19.12; 
#=GS C6GHB6/2891-2904_2989-3081  AC C6GHB6
#=GS C6GHB6/2891-2904_2989-3081  OS Feline coronavirus UU4
#=GS C6GHB6/2891-2904_2989-3081  DE Orf1a polyprotein
#=GS C6GHB6/2891-2904_2989-3081  DR GENE3D; 5cefec57ca46cf16631d90127adb0b72/2891-2904_2989-3081; 
#=GS C6GHB6/2891-2904_2989-3081  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS B7T070/434-447_532-624      AC B7T070
#=GS B7T070/434-447_532-624      OS Canine coronavirus
#=GS B7T070/434-447_532-624      DE Polyprotein 1ab
#=GS B7T070/434-447_532-624      DR GENE3D; 185c81606520a76a3dcb9fc70402e0ad/434-447_532-624; 
#=GS B7T070/434-447_532-624      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS J7FAV5/2813-2826_2911-3003  AC J7FAV5
#=GS J7FAV5/2813-2826_2911-3003  OS Feline coronavirus
#=GS J7FAV5/2813-2826_2911-3003  DE 1ab polyprotein
#=GS J7FAV5/2813-2826_2911-3003  DR GENE3D; da1755067d37774997ddb21d9376fe3a/2813-2826_2911-3003; 
#=GS J7FAV5/2813-2826_2911-3003  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS B7T060/434-447_532-624      AC B7T060
#=GS B7T060/434-447_532-624      OS Canine coronavirus
#=GS B7T060/434-447_532-624      DE Polyprotein 1a
#=GS B7T060/434-447_532-624      DR GENE3D; eb340f057608f575ac4721cd310127cf/434-447_532-624; 
#=GS B7T060/434-447_532-624      DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS J7FAC6/2813-2826_2911-3003  AC J7FAC6
#=GS J7FAC6/2813-2826_2911-3003  OS Feline coronavirus
#=GS J7FAC6/2813-2826_2911-3003  DE 1a polyprotein
#=GS J7FAC6/2813-2826_2911-3003  DR GENE3D; 7a2a875f8f807c928daa988843c06889/2813-2826_2911-3003; 
#=GS J7FAC6/2813-2826_2911-3003  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS B0LJR0/2893-2906_2991-3083  AC B0LJR0
#=GS B0LJR0/2893-2906_2991-3083  OS Feline coronavirus
#=GS B0LJR0/2893-2906_2991-3083  DE Polyprotein 1a
#=GS B0LJR0/2893-2906_2991-3083  DR GENE3D; 1a26922d472d9f1f5ca078837709ff88/2893-2906_2991-3083; 
#=GS B0LJR0/2893-2906_2991-3083  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS T1STP3/2869-2882_2967-3059  AC T1STP3
#=GS T1STP3/2869-2882_2967-3059  OS Feline coronavirus
#=GS T1STP3/2869-2882_2967-3059  DE ORF1a polyprotein
#=GS T1STP3/2869-2882_2967-3059  DR GENE3D; 62eca9d929de78ee4ab2a2cc7554050a/2869-2882_2967-3059; 
#=GS T1STP3/2869-2882_2967-3059  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GS C6GHB5/2891-2904_2989-3081  AC C6GHB5
#=GS C6GHB5/2891-2904_2989-3081  OS Feline coronavirus UU4
#=GS C6GHB5/2891-2904_2989-3081  DE Orf1ab polyprotein
#=GS C6GHB5/2891-2904_2989-3081  DR GENE3D; bad7820a43ea91efa124a7d23b550691/2891-2904_2989-3081; 
#=GS C6GHB5/2891-2904_2989-3081  DR ORG; Viruses; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; Alphacoronavirus 1; 
#=GF TC 243.2 1.4E-76
#=GF SQ 12
Q98VG9/2904-2917_3002-3094          SGLRKMAQPSGVVEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ
P0C6V2/2879-2892_2977-3069          SGLRKMAQPSGLVEEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQ
P0C6Y5/2879-2892_2977-3069          SGLRKMAQPSGLVEEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQ
F1CNY5/2879-2892_2977-3069          SGLRKMAQPSGLVEEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQ
C6GHB6/2891-2904_2989-3081          SGLRKMAQPSGIVEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ
B7T070/434-447_532-624              SGLRKMAQPSGLVEEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGVLYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQ
J7FAV5/2813-2826_2911-3003          SGLRKMAQPSGIIEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLVGEMYGGYEDQPSMQ
B7T060/434-447_532-624              SGLRKMAQPSGLVEEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQ
J7FAC6/2813-2826_2911-3003          SGLRKMAQPSGIIEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLVGEMYGGYEDQPSMQ
B0LJR0/2893-2906_2991-3083          SGLRKMAQPSGVVEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ
T1STP3/2869-2882_2967-3059          SGLRKMAQPSGIVEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGMLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ
C6GHB5/2891-2904_2989-3081          SGLRKMAQPSGIVEEHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ
#=GC scorecons                      99999999999579999999776999999999999999999999999999999999999999999999995999999999999999999996699999999999999
#=GC scorecons_70                   ***********_**********_***********************************************_************************************
#=GC scorecons_80                   ***********_********___***********************************************_********************__**************
#=GC scorecons_90                   ***********__*******___***********************************************_********************__**************
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